Read configuration file and render R Markdown document — render_report • MutSeqR

This function reads a configuration file in YAML format, extracts the parameters, and renders an R Markdown document using the specified parameters.

Usage

render_report(
  config_filepath,
  output_file = "./MutSeqR_Summary_Report.html",
  output_format = "html_document"
)

Arguments

config_filepath: The path to the configuration file.
output_file: The name of the output file. Will be saved to the outputdir in config params.
output_format: The format of the output file. Options are "html_document" (default), "pdf_document", or "all".

Value

None